subroutines, 152 total:
ADAPT_TIMESTEP 3,22 ADJUST_TEMPQV 1,1 ADVANCE_MU_T 1 ADVANCE_UV 1 ADVANCE_W 1 ADVECT_SCALAR 2,2 ADVECT_SCALAR_MONO 1,2 ADVECT_SCALAR_PD 1,2 ADVECT_U 1,2 ADVECT_V 1,2 ADVECT_W 1,2 BLEND_TERRAIN 7,1 BOUND_TKE 1 CALCULATE_FULL 1 CALCULATE_KM_KH 1,7 CALCULATE_N2 1 CALCULATE_PHY_TEND 1 CALC_ALT 1 CALC_COEF_W 1 CALC_CQ 1 CALC_JET_SOUNDING 1 CALC_L_SCALE 2 CALC_M12 1 CALC_M13 1 CALC_M23 1 CALC_MII 1 CALC_MIJ_CONSTANTS 1 CALC_MU_STAGGERED 2 CALC_MU_UV 1 CALC_MU_UV_1 1 CALC_PHP 1 CALC_P_RHO 2 CALC_P_RHO_PHI 2,1 CALC_SMNSMN 1 CALC_WW_CP 1 CAL_DAMPKM 1 CAL_DEFORM_AND_DIV 1 CAL_TITAU_11_22_33 3 CAL_TITAU_12_21 2 CAL_TITAU_13_31 2 CAL_TITAU_23_32 2 COMPUTE_DIFF_METRICS 1 COPY_3D_FIELD 9 CORIOLIS 1 COUPLE 25,2 COUPLE_MOMENTUM 1 COUPLE_OR_UNCOUPLE_EM 4,26 COUPLE_SCALARS_FOR_FILTER 4 CURVATURE 1 DECOUPLE DIAGNOSE_W 2 DUMMY_INTERP_EM DUMP_DATA FIRST_RK_STEP_PART1 1,27 FIRST_RK_STEP_PART2 1,30 FORCE_SCM 1,22 GET_SOUNDING 3,2 HELD_SUAREZ_DAMP 1 HORIZONTAL_DIFFUSION 4 HORIZONTAL_DIFFUSION_2 1,9 HORIZONTAL_DIFFUSION_3DMP 1 HORIZONTAL_DIFFUSION_S 6 HORIZONTAL_DIFFUSION_U_2 1,2 HORIZONTAL_DIFFUSION_V_2 1,2 HORIZONTAL_DIFFUSION_W_2 1,2 HORIZONTAL_PRESSURE_GRADIENT 1 INIT_DOMAIN 3,2 INIT_DOMAIN_CONSTANTS_EM 2,1 INIT_DOMAIN_RK 1,14 INIT_MODULES_EM 1 INIT_MODULE_BIG_STEP INIT_MODULE_INITIALIZE ,8 INIT_MODULE_SMALL_STEP INIT_ZERO_TENDENCY 1,11 INPUT_TERRAIN_RSMAS 2,7 INTERP_DOMAIN_EM_PART1 2,4 INTERP_DOMAIN_EM_PART2 1 ISOTROPIC_KM 1 LBC_FCX_GCX 2 MOIST_PHYSICS_FINISH_EM 1,1 MOIST_PHYSICS_PREP_EM 1 PARRAY 6 PERTURBATION_CORIOLIS 1 PG_BUOY_W 1 PHY_BC 1,13 PHY_PREP 1 POLAR_FILTER_3D 24,2 POLAR_FILTER_FFT_2D_NCAR 1 POLE_POINT_BC 2 POSITIVE_DEFINITE_FILTER POSITIVE_DEFINITE_SHEET POSITIVE_DEFINITE_SLAB PXFT 12,32 READ_INPUT_JET 2,1 RELAX_BDY_DRY 1,6 RELAX_BDY_SCALAR 4,1 RHS_PH 1 RK_ADDTEND_DRY 1 RK_PHYS_BC_DRY_1 1,10 RK_PHYS_BC_DRY_2 1,6 RK_RAYLEIGH_DAMP 1 RK_SCALAR_TEND 5,9 RK_STEP_PREP 1,7 RK_TENDENCY 1,38 RK_UPDATE_SCALAR 5 RK_UPDATE_SCALAR_PD 5 SET_PHYS_BC_DRY_1 ,14 SET_PHYS_BC_DRY_2 1,12 SET_PHYS_BC_SMALLSTEP_1 ,4 SET_TEND 2 SET_W_SURFACE 3 SFS_DRIVER 1,26 SHIFT_DOMAIN_EM 1,11 SHIFT_DOMAIN_EM2 1,9 SIXTH_ORDER_DIFFUSION 5 SMAG2D_KM 1 SMAG_KM 1 SMALL_STEP_FINISH 1 SMALL_STEP_PREP 1 SOLVE_EM
1,206
SPEC_BDYUPDATE_PH 1
SPEC_BDY_DRY 1,6
SPEC_BDY_SCALAR 4,1
START_DOMAIN_EM 1,72
SUMFLUX 1
SYMM_CHECK
TKE_BUOYANCY 1,1
TKE_DISSIP 1,1
TKE_KM 1,1
TKE_RHS 1,3
TKE_SHEAR 1,2
UNCOUPLE_SCALARS_FOR_FILTER 4
UPDATE_AFTER_FEEDBACK_EM 1,13
UPD_AVGFLX 1
VAR1_MIN_MAX
VAR_MIN_MAX
VAR_PRINT
VERTICAL_DIFFUSION 2
VERTICAL_DIFFUSION_2 1,12
VERTICAL_DIFFUSION_3DMP 1
VERTICAL_DIFFUSION_MP 1
VERTICAL_DIFFUSION_S 6
VERTICAL_DIFFUSION_U 1
VERTICAL_DIFFUSION_U_2 1,1
VERTICAL_DIFFUSION_V 1
VERTICAL_DIFFUSION_V_2 1,1
VERTICAL_DIFFUSION_W_2 1,1
W_DAMP 1,7
ZERO_AVGFLX 2
ZERO_BDYTEND 1,1
ZERO_POLE 2
ZERO_TEND 24